4HTJ Crystallographic structure of the membrane-proximal ectodomain of the human receptor-type protein-tyrosine phosphatase phogrin at pH 4.6 date
authors Noguera, M.E., Jakoncic, J., Poskus, E., Ermacora, M.R.
compound source
symmetry
R_factor
R_Free 0.2377
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.01
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure of the mature ectodomain of phogrin., Noguera ME, Primo ME, Jakoncic J, Poskus E, Solimena M, Ermacora MR, J Struct Funct Genomics. 2015 Mar;16(1):1-9. doi: 10.1007/s10969-014-9191-0. Epub, 2014 Nov 26. PMID:25421040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (4htj.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 4HTJ
  • Structure Factors (62 Kb)
  • Retrieve 4HTJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HTJ from S2C, [Save to disk]
  • Re-refined 4htj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HTJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HTJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HTJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4htj] [4htj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HTJ
  • Community annotation for 4HTJ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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