4HVS Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX647 date 2012-11-06
authors Zhang, Y., Zhang, C.
compound source
symmetry
R_factor
R_Free 0.2270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 647 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and pharmacology of a highly specific dual FMS and KIT kinase inhibitor., Zhang C, Ibrahim PN, Zhang J, Burton EA, Habets G, Zhang Y, Powell B, West BL, Matusow B, Tsang G, Shellooe R, Carias H, Nguyen H, Marimuthu A, Zhang KY, Oh A, Bremer R, Hurt CR, Artis DR, Wu G, Nespi M, Spevak W, Lin P, Nolop K, Hirth P, Tesch GH, Bollag G, Proc Natl Acad Sci U S A. 2013 Mar 14. PMID:23493555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4hvs.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (4hvs.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 4HVS
  • CSU: Contacts of Structural Units for 4HVS
  • Structure Factors (416 Kb)
  • Retrieve 4HVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HVS from S2C, [Save to disk]
  • Re-refined 4hvs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HVS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HVS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hvs] [4hvs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HVS: [TyrKc ] by SMART
    • Other resources with information on 4HVS
  • Community annotation for 4HVS at PDBWiki (http://pdbwiki.org)

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