4HXD Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases date
authors Capodagli, G.C., Pegan, S.D.
compound source
symmetry
R_factor
R_Free 0.2780
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand 3CN, SO4 enzyme
Primary referenceDiversity of ubiquitin and ISG15 specificity among nairoviruses' viral ovarian tumor domain proteases., Capodagli GC, Deaton MK, Baker EA, Lumpkin RJ, Pegan SD, J Virol. 2013 Apr;87(7):3815-27. doi: 10.1128/JVI.03252-12. Epub 2013 Jan 23. PMID:23345508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4hxd.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (4hxd.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4HXD
  • CSU: Contacts of Structural Units for 4HXD
  • Structure Factors (369 Kb)
  • Retrieve 4HXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HXD from S2C, [Save to disk]
  • Re-refined 4hxd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HXD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HXD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hxd_B] [4hxd] [4hxd_D] [4hxd_A] [4hxd_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HXD: [UBQ ] by SMART
  • Other resources with information on 4HXD
  • Community annotation for 4HXD at PDBWiki (http://pdbwiki.org)

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