4HY0 Crystal structure of XIAP BIR3 with T3256336 date 2012-11-12
authors Snell, G.S., Dougan, D.R.
compound source
symmetry
R_factor
R_Free 0.26221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.84
ligand 1AQ, ZN enzyme
Primary referenceDesign and Synthesis of Potent Inhibitor of Apoptosis (IAP) Proteins Antagonists Bearing an Octahydropyrrolo[1,2-a]pyrazine Scaffold as a Novel Proline Mimetic., Hashimoto K, Saito B, Miyamoto N, Oguro Y, Tomita D, Shiokawa Z, Asano M, Kakei H, Taya N, Kawasaki M, Sumi H, Yabuki M, Iwai K, Yoshida S, Yoshimatsu M, Aoyama K, Kosugi Y, Kojima T, Morishita N, Dougan DR, Snell GP, Imamura S, Ishikawa T, J Med Chem. 2013 Jan 8. PMID:23298277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]
  • Biological Unit Coordinates (4hy0.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (4hy0.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (4hy0.pdb3.gz) 72 Kb
  • Biological Unit Coordinates (4hy0.pdb4.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 4HY0
  • CSU: Contacts of Structural Units for 4HY0
  • Structure Factors (376 Kb)
  • Retrieve 4HY0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HY0 from S2C, [Save to disk]
  • Re-refined 4hy0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HY0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HY0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HY0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hy0_A] [4hy0_C] [4hy0_G] [4hy0_D] [4hy0_E] [4hy0_F] [4hy0_H] [4hy0_B] [4hy0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HY0: [BIR ] by SMART
    • Other resources with information on 4HY0
  • Community annotation for 4HY0 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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