4HY4 Crystal structure of cIAP1 BIR3 bound to T3170284 date 2012-11-12
authors Dougan, D.R., Mol, C.D., Snell, G.P.
compound source
symmetry
R_factor
R_Free 0.16993
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.25
ligand 1BG, ZN enzyme
Primary referenceDesign and Synthesis of Potent Inhibitor of Apoptosis (IAP) Proteins Antagonists Bearing an Octahydropyrrolo[1,2-a]pyrazine Scaffold as a Novel Proline Mimetic., Hashimoto K, Saito B, Miyamoto N, Oguro Y, Tomita D, Shiokawa Z, Asano M, Kakei H, Taya N, Kawasaki M, Sumi H, Yabuki M, Iwai K, Yoshida S, Yoshimatsu M, Aoyama K, Kosugi Y, Kojima T, Morishita N, Dougan DR, Snell GP, Imamura S, Ishikawa T, J Med Chem. 2013 Jan 8. PMID:23298277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4hy4.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (4hy4.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4HY4
  • CSU: Contacts of Structural Units for 4HY4
  • Structure Factors (926 Kb)
  • Retrieve 4HY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HY4 from S2C, [Save to disk]
  • Re-refined 4hy4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HY4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HY4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hy4_A] [4hy4_B] [4hy4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HY4: [BIR ] by SMART
    • Other resources with information on 4HY4
  • Community annotation for 4HY4 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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