4I08 Oxidoreductase date Nov 16, 2012
title Crystal Structure Of Beta-Ketoacyl-Acyl Carrier Protein Redu (Fabg) From Vibrio Cholerae In Complex With Nadph
authors J.Hou, M.Chruszcz, H.Zheng, T.Osinski, W.F.Anderson, W.Minor, Cent Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: 3-Oxoacyl-[Acyl-Carrier-Protein] Reductase Fabg
Chain: A, B
Synonym: 3-Ketoacyl-Acyl Carrier Protein Reductase, Beta-Ke Acyl Carrier Protein Reductase, Beta-Ketoacyl-Acp Reductase
Ec: 1.1.1.100
Engineered: Yes
Organism_scientific: Vibrio Cholerae O1
Organism_taxid: 243277
Strain: Atcc 39315 El Tor Inaba N16961
Gene: Fabg, Vc2021, Vc_2021
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 62
R_factor 0.153 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.941 63.941 190.374 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.06 Å
ligand EDO, NDP, SO4 enzyme Oxidoreductase E.C.1.1.1.100 BRENDA
Gene VC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDissecting the structural elements for the activation of beta-ketoacyl-(acyl carrier protein) reductase from Vibrio cholerae., Hou J, Zheng H, Chruszcz M, Zimmerman MD, Shumilin IA, Osinski T, Demas M, Grimshaw S, Minor W, J Bacteriol. 2015 Nov 9. pii: JB.00360-15. PMID:26553852
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (4i08.pdb1.gz) 295 Kb
  • LPC: Ligand-Protein Contacts for 4I08
  • CSU: Contacts of Structural Units for 4I08
  • Structure Factors (589 Kb)
  • Retrieve 4I08 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I08 from S2C, [Save to disk]
  • Re-refined 4i08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I08 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I08
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I08, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i08_A] [4i08_B] [4i08]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4I08
  • Community annotation for 4I08 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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