4I3L Crystal structure of a metabolic reductase with 6-benzyl-1-hydroxy-4-methylpyridin-2(1H)-one date 2012-11-26
authors Zheng, B., Yao, Y., Liu, Z., Deng, L., Anglin, J.L., Jiang, H., Prasad, B.V.V., Song, Y.
compound source
symmetry
R_factor
R_Free 0.29287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.29
ligand 1BZ, NDP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic Investigation and Selective Inhibition of Mutant Isocitrate Dehydrogenase., Zheng B, Yao Y, Liu Z, Deng L, Anglin JL, Jiang H, Prasad BV, Song Y, ACS Med Chem Lett. 2013 Jun 13;4(6):542-546. PMID:23795241
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4i3l.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4I3L
  • CSU: Contacts of Structural Units for 4I3L
  • Structure Factors (236 Kb)
  • Retrieve 4I3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I3L from S2C, [Save to disk]
  • Re-refined 4i3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I3L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I3L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i3l] [4i3l_A] [4i3l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I3L: [Iso_dh ] by SMART
    • Other resources with information on 4I3L
  • Community annotation for 4I3L at PDBWiki (http://pdbwiki.org)

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