4I6N	Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester	date	2012-11-29
authors	Morrow, M.E., Ronau, J.A., White, R.R., Artavanis-Tsakonas, K., Das, C.
compound		source
symmetry		R_factor R_Free 0.2114
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.70
ligand	DTT, GVE, MSE, NA	enzyme
Gene Ontology	Chain Function Process Component A, C
Primary reference	Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C-Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity., Morrow ME, Kim MI, Ronau JA, Sheedlo MJ, White RR, Chaney J, Paul LN, Lill MA, Artavanis-Tsakonas K, Das C, Biochemistry. 2013 May 9. PMID:23617878

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk] Biological Unit Coordinates (4i6n.pdb1.gz) 105 Kb Biological Unit Coordinates (4i6n.pdb2.gz) 102 Kb LPC: Ligand-Protein Contacts for 4I6N CSU: Contacts of Structural Units for 4I6N Structure Factors (812 Kb) Retrieve 4I6N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4I6N from S2C, [Save to disk] Re-refined 4i6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4I6N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4I6N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4I6N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4i6n_D] [4i6n] [4i6n_C] [4i6n_A] [4i6n_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4I6N: [UBQ ] by SMART

Other resources with information on 4I6N

Community annotation for 4I6N at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---