4I7C Siah1 mutant bound to synthetic peptide (ACE)KLRPV(23P)MVRPWVR date 2012-11-30
authors Santelli, E., Stebbins, J.L., Feng, Y., De, S.K., Purves, A., Motamedchaboki, K., Wu, B., Ronai, Z.A., Liddington, R.C., Pellecchia, M.
compound source
symmetry
R_factor
R_Free 0.21920
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand 23P, MPD, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure-Based Design of Covalent Siah Inhibitors., Stebbins JL, Santelli E, Feng Y, De SK, Purves A, Motamedchaboki K, Wu B, Ronai ZA, Liddington RC, Pellecchia M, Chem Biol. 2013 Jul 24. pii: S1074-5521(13)00241-X. doi:, 10.1016/j.chembiol.2013.06.008. PMID:23891150
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4i7c.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (4i7c.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4I7C
  • CSU: Contacts of Structural Units for 4I7C
  • Structure Factors (150 Kb)
  • Retrieve 4I7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I7C from S2C, [Save to disk]
  • Re-refined 4i7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I7C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I7C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i7c_C] [4i7c] [4i7c_D] [4i7c_A] [4i7c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4I7C
  • Community annotation for 4I7C at PDBWiki (http://pdbwiki.org)

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