4I8D Crystal Structure of Beta-D-glucoside glucohydrolase from Trichoderma reesei date
authors Helmich, K.E., Banerjee, G., Bianchetti, C.M., Gudmundsson, M., Sandgren, M., Walton, J.D., Phillips, G.N., CESG, Center.for.Eukaryotic.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.2702
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.48
ligand BGC, BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiochemical Characterization and Crystal Structures of a Fungal Family 3 beta-Glucosidase, Cel3A from Hypocrea jecorina., Karkehabadi S, Helmich KE, Kaper T, Hansson H, Mikkelsen NE, Gudmundsson M, Piens K, Fujdala M, Banerjee G, Scott-Craig JS, Walton JD, Phillips GN Jr, Sandgren M, J Biol Chem. 2014 Aug 27. pii: jbc.M114.587766. PMID:25164811
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (4i8d.pdb1.gz) 226 Kb
  • Biological Unit Coordinates (4i8d.pdb2.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 4I8D
  • CSU: Contacts of Structural Units for 4I8D
  • Structure Factors (732 Kb)
  • Retrieve 4I8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I8D from S2C, [Save to disk]
  • Re-refined 4i8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I8D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I8D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i8d_A] [4i8d_B] [4i8d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I8D: [Fn3_like ] by SMART
  • Other resources with information on 4I8D
  • Community annotation for 4I8D at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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