4ICC Crystal structure of human AKR1B10 complexed with NADP+ and JF0064 date
authors Cousido-Siah, A., Ruiz, F.X., Mitschler, A., Porte, S., Lera, A.R.de., Martin, M.J., Fuente, J.A.de.la., Klebe, G., Farres, J., Pares, X., Podjarny, A.
compound source
symmetry
R_factor
R_Free 0.1864
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand 64I, MLY, MLZ, NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceIdentification of a novel polyfluorinated compound as a lead to inhibit the human enzymes aldose reductase and AKR1B10: structure determination of both ternary complexes and implications for drug design., Cousido-Siah A, Ruiz FX, Mitschler A, Porte S, de Lera AR, Martin MJ, Manzanaro S, de la Fuente JA, Terwesten F, Betz M, Klebe G, Farres J, Pares X, Podjarny A, Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):889-903. doi:, 10.1107/S1399004713033452. Epub 2014 Feb 27. PMID:24598757
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4icc.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 4ICC
  • CSU: Contacts of Structural Units for 4ICC
  • Structure Factors (254 Kb)
  • Retrieve 4ICC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ICC from S2C, [Save to disk]
  • Re-refined 4icc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ICC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ICC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ICC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4icc] [4icc_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ICC
  • Community annotation for 4ICC at PDBWiki (http://pdbwiki.org)

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