4IG9 Structure of NAD-dependent protein deacetylase sirtuin-1 (open state, 2.64 A) date 2012-12-16
authors Davenport, A.M., Huber, F.M., Hoelz, A.
compound source
symmetry
R_factor
R_Free 0.2628
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.64
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceStructural and Functional Analysis of Human SIRT1., Davenport AM, Huber FM, Hoelz A, J Mol Biol. 2013 Oct 10. pii: S0022-2836(13)00635-9. doi:, 10.1016/j.jmb.2013.10.009. PMID:24120939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (4ig9.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4ig9.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (4ig9.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (4ig9.pdb4.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 4IG9
  • CSU: Contacts of Structural Units for 4IG9
  • Structure Factors (526 Kb)
  • Retrieve 4IG9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IG9 from S2C, [Save to disk]
  • Re-refined 4ig9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IG9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IG9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IG9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ig9_G] [4ig9_C] [4ig9_B] [4ig9_F] [4ig9_H] [4ig9] [4ig9_A] [4ig9_E] [4ig9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IG9
  • Community annotation for 4IG9 at PDBWiki (http://pdbwiki.org)

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