4II3 Crystal structure of S. pombe Ubiquitin activating enzyme 1 (Uba1) in complex with ubiquitin and ATP/Mg date
authors Olsen, S.K., Lima, C.D.
compound source
symmetry
R_factor
R_Free 0.2829
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand ATP, CA, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure of a ubiquitin e1-e2 complex: insights to e1-e2 thioester transfer., Olsen SK, Lima CD, Mol Cell. 2013 Mar 7;49(5):884-96. doi: 10.1016/j.molcel.2013.01.013. Epub 2013, Feb 14. PMID:23416107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (4ii3.pdb1.gz) 172 Kb
  • Biological Unit Coordinates (4ii3.pdb2.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 4II3
  • CSU: Contacts of Structural Units for 4II3
  • Structure Factors (482 Kb)
  • Retrieve 4II3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4II3 from S2C, [Save to disk]
  • Re-refined 4ii3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4II3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4II3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4II3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ii3_D] [4ii3] [4ii3_B] [4ii3_A] [4ii3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4II3: [UBA_e1_C] [UBQ ] by SMART
  • Other resources with information on 4II3
  • Community annotation for 4II3 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science