4IIQ Crystal structure of a human MAIT TCR in complex with bovine MR1 date
authors Lopez-Sagaseta, J., Adams, E.J.
compound source
symmetry
R_factor
R_Free 0.2705
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.86
ligand KFP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceThe molecular basis for Mucosal-Associated Invariant T cell recognition of MR1 proteins., Lopez-Sagaseta J, Dulberger CL, Crooks JE, Parks CD, Luoma AM, McFedries A, Van Rhijn I, Saghatelian A, Adams EJ, Proc Natl Acad Sci U S A. 2013 May 7;110(19):E1771-8. doi:, 10.1073/pnas.1222678110. Epub 2013 Apr 23. PMID:23613577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (4iiq.pdb1.gz) 271 Kb
  • LPC: Ligand-Protein Contacts for 4IIQ
  • CSU: Contacts of Structural Units for 4IIQ
  • Structure Factors (208 Kb)
  • Retrieve 4IIQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IIQ from S2C, [Save to disk]
  • Re-refined 4iiq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IIQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IIQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IIQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iiq] [4iiq_C] [4iiq_B] [4iiq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4IIQ: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 4IIQ
  • Community annotation for 4IIQ at PDBWiki (http://pdbwiki.org)

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