4IP9 Structure of native human serum amyloid A1 date
authors Lu, J., Sun, P.D.
compound source
symmetry
R_factor
R_Free 0.2584
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand P4C enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural mechanism of serum amyloid A-mediated inflammatory amyloidosis., Lu J, Yu Y, Zhu I, Cheng Y, Sun PD, Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5189-94. doi:, 10.1073/pnas.1322357111. Epub 2014 Mar 24. PMID:24706838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4ip9.pdb1.gz) 215 Kb
  • LPC: Ligand-Protein Contacts for 4IP9
  • CSU: Contacts of Structural Units for 4IP9
  • Structure Factors (101 Kb)
  • Retrieve 4IP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IP9 from S2C, [Save to disk]
  • Re-refined 4ip9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IP9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IP9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ip9_A] [4ip9] [4ip9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IP9: [SAA ] by SMART
    • Other resources with information on 4IP9
  • Community annotation for 4IP9 at PDBWiki (http://pdbwiki.org)

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