4IPY HIV capsid C-terminal domain date
authors Lampel, A., Yaniv, O., Berger, O., Bachrach, E., Gazit, E., Frolow, F.
compound source
symmetry
R_factor
R_Free 0.2180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.64
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA triclinic crystal structure of the carboxy-terminal domain of HIV-1 capsid protein with four molecules in the asymmetric unit reveals a novel packing interface., Lampel A, Yaniv O, Berger O, Bacharach E, Gazit E, Frolow F, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):602-6. doi:, 10.1107/S1744309113011871. Epub 2013 May 23. PMID:23722834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4ipy.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (4ipy.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (4ipy.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (4ipy.pdb4.gz) 30 Kb
  • Biological Unit Coordinates (4ipy.pdb5.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 4IPY
  • CSU: Contacts of Structural Units for 4IPY
  • Structure Factors (280 Kb)
  • Retrieve 4IPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IPY from S2C, [Save to disk]
  • Re-refined 4ipy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IPY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IPY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ipy_A] [4ipy] [4ipy_C] [4ipy_D] [4ipy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4IPY
  • Community annotation for 4IPY at PDBWiki (http://pdbwiki.org)

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