4IQV Tdt core in complex with inhibitor 6-[4-(3-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid and ssDNA date
authors Gouge, J., Delarue, M.
compound source
symmetry
R_factor
R_Free 0.2450
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand 1FO, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew Nucleotide-Competitive Non-Nucleoside Inhibitors of Terminal Deoxynucleotidyl Transferase: Discovery, Characterization and Crystal Structure in Complex with the Target., Costi R, Cuzzucoli Crucitti G, Pescatori L, Messore A, Scipione L, Tortorella S, Amoroso A, Crespan E, Campiglia P, Maresca B, Novellino E, Gouge J, Delarue MH, Maga G, Di Santo R, J Med Chem. 2013 Aug 22. PMID:23968551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (4iqv.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 4IQV
  • CSU: Contacts of Structural Units for 4IQV
  • Structure Factors (391 Kb)
  • Retrieve 4IQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IQV from S2C, [Save to disk]
  • Re-refined 4iqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IQV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IQV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iqv_C] [4iqv_A] [4iqv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IQV: [POLXc ] by SMART
    • Other resources with information on 4IQV
  • Community annotation for 4IQV at PDBWiki (http://pdbwiki.org)

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