4ITJ Crystal structure of RIP1 kinase in complex with necrostatin-4 date 2013-01-18
authors Xie, T., Peng, W., Liu, Y., Yan, C., Shi, Y.
compound source
symmetry
R_factor
R_Free 0.2215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 1HX, IOD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis of RIP1 Inhibition by Necrostatins., Xie T, Peng W, Liu Y, Yan C, Maki J, Degterev A, Yuan J, Shi Y, Structure. 2013 Mar 5;21(3):493-9. doi: 10.1016/j.str.2013.01.016. PMID:23473668
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (4itj.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (4itj.pdb2.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 4ITJ
  • CSU: Contacts of Structural Units for 4ITJ
  • Structure Factors (1926 Kb)
  • Retrieve 4ITJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ITJ from S2C, [Save to disk]
  • Re-refined 4itj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ITJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ITJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ITJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4itj_B] [4itj] [4itj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ITJ: [STYKc ] by SMART
  • Other resources with information on 4ITJ
  • Community annotation for 4ITJ at PDBWiki (http://pdbwiki.org)

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