4IVQ	Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with IN43/5	date
authors	Pernot, L., Novakovic, I., Westermaier, Y., Perozzo, R., Raic-Malic, S., Scapozza, L.
compound		source
symmetry		R_factor R_Free 0.2218
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.90
ligand	I43, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	A new N-methyl thymine derivative comprising a dihydroxyisobutenyl unit as ligand for thymidine kinase of herpes simplex virus type 1 (HSV-1 TK)., Kristafor S, Novakovic I, Gazivoda Kraljevic T, Kraljevic Pavelic S, Lucin P, Westermaier Y, Pernot L, Scapozza L, Ametamey SM, Raic-Malic S, Bioorg Med Chem Lett. 2011 Oct 15;21(20):6161-5. doi: 10.1016/j.bmcl.2011.07.115., Epub 2011 Aug 6. PMID:21911293

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (4ivq.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 4IVQ CSU: Contacts of Structural Units for 4IVQ Structure Factors (414 Kb) Retrieve 4IVQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4IVQ from S2C, [Save to disk] Re-refined 4ivq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4IVQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4IVQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4IVQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ivq_B] [4ivq] [4ivq_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4IVQ

Community annotation for 4IVQ at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---