4IX8 Crystal structure of Tyrosine aminotransferase from Leishmania infantum date
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.2059
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand CL, LLP enzyme
Gene LINJ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of tyrosine aminotransferase from Leishmania infantum., Moreno MA, Abramov A, Abendroth J, Alonso A, Zhang S, Alcolea PJ, Edwards T, Lorimer D, Myler PJ, Larraga V, Acta Crystallogr F Struct Biol Commun. 2014 May;70(Pt 5):583-7. doi:, 10.1107/S2053230X14007845. Epub 2014 Apr 25. PMID:24817714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (363 Kb) [Save to disk]
  • Biological Unit Coordinates (4ix8.pdb1.gz) 357 Kb
  • LPC: Ligand-Protein Contacts for 4IX8
  • CSU: Contacts of Structural Units for 4IX8
  • Structure Factors (368 Kb)
  • Retrieve 4IX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IX8 from S2C, [Save to disk]
  • Re-refined 4ix8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IX8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IX8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ix8_B] [4ix8] [4ix8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IX8
  • Community annotation for 4IX8 at PDBWiki (http://pdbwiki.org)

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