4IY8 Bmlp3 - P21 crystal form date
authors Pietrzyk, A.J., Bujacz, A., Mueller-Dieckmann, J., Jaskolski, M., Bujacz, G.
compound source
symmetry
R_factor
R_Free 0.25920
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.36
ligand P6G, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceTwo Crystal Structures of Bombyx mori Lipoprotein 3 - Structural Characterization of a New 30-kDa Lipoprotein Family Member., Pietrzyk AJ, Bujacz A, Mueller-Dieckmann J, Lochynska M, Jaskolski M, Bujacz G, PLoS One. 2013 Apr 16;8(4):e61303. doi: 10.1371/journal.pone.0061303. Print 2013. PMID:23613829
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (4iy8.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (4iy8.pdb2.gz) 82 Kb
  • Biological Unit Coordinates (4iy8.pdb3.gz) 82 Kb
  • Biological Unit Coordinates (4iy8.pdb4.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 4IY8
  • CSU: Contacts of Structural Units for 4IY8
  • Structure Factors (842 Kb)
  • Retrieve 4IY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IY8 from S2C, [Save to disk]
  • Re-refined 4iy8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IY8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IY8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iy8] [4iy8_B] [4iy8_D] [4iy8_A] [4iy8_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4IY8
  • Community annotation for 4IY8 at PDBWiki (http://pdbwiki.org)

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