4IYC Structure of the T244A mutant of the PANTON-VALENTINE LEUCOCIDIN component from STAPHYLOCOCCUS AUREUS date
authors Maveyraud, L., Guerin, F., Lavnetie, B.J., Prevost, G., Mourey, L.
compound source
symmetry
R_factor
R_Free 0.2458
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.75
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceResidues essential for panton-valentine leukocidin s component binding to its cell receptor suggest both plasticity and adaptability in its interaction surface., Laventie BJ, Guerin F, Mourey L, Tawk MY, Jover E, Maveyraud L, Prevost G, PLoS One. 2014 Mar 18;9(3):e92094. doi: 10.1371/journal.pone.0092094. eCollection, 2014. PMID:24643034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (376 Kb) [Save to disk]
  • Biological Unit Coordinates (4iyc.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (4iyc.pdb2.gz) 95 Kb
  • Biological Unit Coordinates (4iyc.pdb3.gz) 95 Kb
  • Biological Unit Coordinates (4iyc.pdb4.gz) 95 Kb
  • CSU: Contacts of Structural Units for 4IYC
  • Structure Factors (335 Kb)
  • Retrieve 4IYC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IYC from S2C, [Save to disk]
  • Re-refined 4iyc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IYC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IYC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IYC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iyc] [4iyc_A] [4iyc_B] [4iyc_D] [4iyc_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IYC
  • Community annotation for 4IYC at PDBWiki (http://pdbwiki.org)

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