4IYE Crystal structure of AdTx1 (rho-Da1a) from eastern green mamba (Dendroaspis angusticeps) date
authors Stura, E.A., Vera, L., Maiga, A.A., Marchetti, C., Lorphelin, A., Bellanger, L., Servant, D., Gilles, N.
compound source
symmetry
R_factor
R_Free 0.25188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand EDO, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


  • Primary referenceCrystallization of recombinant green mamba rho-Da1a toxin during a lyophilization procedure and its structure determination., Maiga A, Vera L, Marchetti C, Lorphelin A, Bellanger L, Mourier G, Servent D, Gilles N, Stura EA, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):704-9. doi:, 10.1107/S1744309113011470. Epub 2013 May 29. PMID:23722859
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (4iye.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 4IYE
  • CSU: Contacts of Structural Units for 4IYE
  • Structure Factors (54 Kb)
  • Retrieve 4IYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IYE from S2C, [Save to disk]
  • Re-refined 4iye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IYE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IYE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iye_A] [4iye]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4IYE
  • Community annotation for 4IYE at PDBWiki (http://pdbwiki.org)

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