4IYT Structure Of The Y184A Mutant Of The PANTON-VALENTINE LEUCOCIDIN S Component From STAPHYLOCOCCUS AUREUS date
authors Guerin, F., Laventie, B.J., Prevost, G., Mourey, L., Maveyraud, L.
compound source
symmetry
R_factor
R_Free 0.2180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand MES enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceResidues essential for panton-valentine leukocidin s component binding to its cell receptor suggest both plasticity and adaptability in its interaction surface., Laventie BJ, Guerin F, Mourey L, Tawk MY, Jover E, Maveyraud L, Prevost G, PLoS One. 2014 Mar 18;9(3):e92094. doi: 10.1371/journal.pone.0092094. eCollection, 2014. PMID:24643034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4iyt.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4IYT
  • CSU: Contacts of Structural Units for 4IYT
  • Structure Factors (231 Kb)
  • Retrieve 4IYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IYT from S2C, [Save to disk]
  • Re-refined 4iyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IYT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IYT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iyt_A] [4iyt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4IYT
  • Community annotation for 4IYT at PDBWiki (http://pdbwiki.org)

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