4J5C	Human Cyclophilin D Complexed with an Inhibitor	date	2013-02-08
authors	Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.
compound		source
symmetry		R_factor R_Free 0.1042
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.03
ligand	7I6	enzyme
Gene Ontology	Chain Function Process Component X
Primary reference	Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities., Ahmed-Belkacem A, Colliandre L, Ahnou N, Nevers Q, Gelin M, Bessin Y, Brillet R, Cala O, Douguet D, Bourguet W, Krimm I, Pawlotsky JM, Guichou JF, Nat Commun. 2016 Sep 22;7:12777. doi: 10.1038/ncomms12777. PMID:27652979

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (4j5c.pdb1.gz) 106 Kb LPC: Ligand-Protein Contacts for 4J5C CSU: Contacts of Structural Units for 4J5C Structure Factors (783 Kb) Retrieve 4J5C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4J5C from S2C, [Save to disk] Re-refined 4j5c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4J5C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4J5C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4J5C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4j5c] [4j5c_X] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4J5C

Community annotation for 4J5C at PDBWiki (http://pdbwiki.org)

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