4JA3 Partially occluded inward open conformation of the xylose transporter XylE from E. coli date 2013-02-18
authors Quistgaard, E.M., Low, C., Moberg, P., Tresaugues, L., Nordlund, P.
compound source
symmetry
R_factor
R_Free 0.3146
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
ligand CD, LU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for substrate transport in the GLUT-homology family of monosaccharide transporters., Quistgaard EM, Low C, Moberg P, Tresaugues L, Nordlund P, Nat Struct Mol Biol. 2013 Jun;20(6):766-8. doi: 10.1038/nsmb.2569. Epub 2013 Apr , 28. PMID:23624861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (4ja3.pdb1.gz) 142 Kb
  • Biological Unit Coordinates (4ja3.pdb2.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4JA3
  • CSU: Contacts of Structural Units for 4JA3
  • Structure Factors (239 Kb)
  • Retrieve 4JA3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JA3 from S2C, [Save to disk]
  • Re-refined 4ja3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JA3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JA3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JA3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ja3_B] [4ja3] [4ja3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JA3
  • Community annotation for 4JA3 at PDBWiki (http://pdbwiki.org)

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