4JF7 Structure of the parainfluenza virus 5 (PIV5) hemagglutinin-neuraminidase (HN) ectodomain date 2013-02-27
authors Welch, B.D., Yuan, P., Bose, S., Kors, C.A., Lamb, R.A., Jardetzky, T.S.
compound source
symmetry
R_factor
R_Free 0.2068
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand CA, MAN, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the Parainfluenza Virus 5 (PIV5) Hemagglutinin-Neuraminidase (HN) Ectodomain., Welch BD, Yuan P, Bose S, Kors CA, Lamb RA, Jardetzky TS, PLoS Pathog. 2013 Aug;9(8):e1003534. doi: 10.1371/journal.ppat.1003534. Epub 2013, Aug 8. PMID:23950713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (656 Kb) [Save to disk]
  • Biological Unit Coordinates (4jf7.pdb1.gz) 646 Kb
  • LPC: Ligand-Protein Contacts for 4JF7
  • CSU: Contacts of Structural Units for 4JF7
  • Structure Factors (650 Kb)
  • Retrieve 4JF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JF7 from S2C, [Save to disk]
  • Re-refined 4jf7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JF7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JF7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jf7_D] [4jf7_A] [4jf7_B] [4jf7_C] [4jf7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JF7
  • Community annotation for 4JF7 at PDBWiki (http://pdbwiki.org)

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