4JFH High Affinity alpha24-beta17 T Cell Receptor for A2 HLA-Melanoma peptide complex date
authors Rizkallah, P.J., Cole, D.K., Madura, F., Sewell, A.K.
compound source
symmetry
R_factor
R_Free 0.2470
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand EDO, GOL, SO4 enzyme
Primary referenceT-cell receptor specificity maintained by altered thermodynamics., Madura F, Rizkallah PJ, Miles KM, Holland CJ, Bulek AM, Fuller A, Schauenburg AJ, Miles JJ, Liddy N, Sami M, Li Y, Hossain M, Baker BM, Jakobsen BK, Sewell AK, Cole DK, J Biol Chem. 2013 May 22. PMID:23698002
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4jfh.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 4JFH
  • CSU: Contacts of Structural Units for 4JFH
  • Structure Factors (1352 Kb)
  • Retrieve 4JFH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JFH from S2C, [Save to disk]
  • Re-refined 4jfh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JFH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JFH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JFH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jfh_E] [4jfh] [4jfh_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JFH: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4JFH
  • Community annotation for 4JFH at PDBWiki (http://pdbwiki.org)

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