4JJN Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome date 2013-03-08
authors Wang, F., Li, G., Mohammed, A., Lu, C., Currie, M., Johnson, A., Moazed, D.
compound source
symmetry
R_factor
R_Free 0.2548
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.09
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K, L


Primary referenceHeterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA., Wang F, Li G, Altaf M, Lu C, Currie MA, Johnson A, Moazed D, Proc Natl Acad Sci U S A. 2013 May 6. PMID:23650358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (628 Kb) [Save to disk]
  • Biological Unit Coordinates (4jjn.pdb1.gz) 620 Kb
  • CSU: Contacts of Structural Units for 4JJN
  • Structure Factors (2279 Kb)
  • Retrieve 4JJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JJN from S2C, [Save to disk]
  • Re-refined 4jjn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JJN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JJN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jjn_I] [4jjn_K] [4jjn] [4jjn_D] [4jjn_E] [4jjn_A] [4jjn_C] [4jjn_F] [4jjn_J] [4jjn_B] [4jjn_G] [4jjn_H] [4jjn_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JJN: [BAH] [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 4JJN
  • Community annotation for 4JJN at PDBWiki (http://pdbwiki.org)

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