4JPE Spirocyclic Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors date 2013-03-19
authors Vigers, G.P.A., Smith, D.
compound source
symmetry
R_factor
R_Free 0.22063
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 1M7, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpirocyclic ss-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors: From Hit to Lowering of Cerebrospinal Fluid (CSF) Amyloid Beta in a Higher Species., Hunt KW, Cook AW, Watts RJ, Clark CT, Vigers G, Smith D, Metcalf AT, Gunawardana IW, Burkard M, Cox AA, Geck-Do M, Dutcher D, Thomas AA, Rana S, Kallan NC, Delisle RK, Rizzi JP, Regal K, Sammond D, Groneberg R, Siu M, Purkey H, Lyssikatos JP, Marlow A, Liu X, Tang TP, J Med Chem. 2013 Mar 28. PMID:23537249
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4jpe.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4JPE
  • CSU: Contacts of Structural Units for 4JPE
  • Structure Factors (478 Kb)
  • Retrieve 4JPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JPE from S2C, [Save to disk]
  • Re-refined 4jpe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JPE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JPE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jpe] [4jpe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JPE
  • Community annotation for 4JPE at PDBWiki (http://pdbwiki.org)

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