4JPG 2-((1H-benzo[d]imidazol-1-yl)methyl)-4H-pyrido[1,2-a]pyrimidin-4-ones as Novel PKM2 Activators date 2013-03-19
authors Greasley, S.E., Hickey, M., Phonephaly, H., Cronin, C.
compound source
symmetry
R_factor
R_Free 0.2194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.33
ligand 1OX, FBP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery of 2-((1H-benzo[d]imidazol-1-yl)methyl)-4H-pyrido[1,2-a]pyrimidin-4-ones as novel PKM2 activators., Guo C, Linton A, Jalaie M, Kephart S, Ornelas M, Pairish M, Greasley S, Richardson P, Maegley K, Hickey M, Li J, Wu X, Ji X, Xie Z, Bioorg Med Chem Lett. 2013 Jun 1;23(11):3358-63. doi: 10.1016/j.bmcl.2013.03.090., Epub 2013 Apr 1. PMID:23622982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk]
  • Biological Unit Coordinates (4jpg.pdb1.gz) 322 Kb
  • LPC: Ligand-Protein Contacts for 4JPG
  • CSU: Contacts of Structural Units for 4JPG
  • Structure Factors (1818 Kb)
  • Retrieve 4JPG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JPG from S2C, [Save to disk]
  • Re-refined 4jpg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JPG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JPG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JPG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jpg] [4jpg_D] [4jpg_B] [4jpg_A] [4jpg_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JPG
  • Community annotation for 4JPG at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science