4JR1 Human procaspase-7 bound to Ac-DEVD-CMK date
authors Thomsen, N.D., Wells, J.A.
compound source
symmetry
R_factor
R_Free 0.2274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand 0QE, ACE, AKZ, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural snapshots reveal distinct mechanisms of procaspase-3 and -7 activation., Thomsen ND, Koerber JT, Wells JA, Proc Natl Acad Sci U S A. 2013 May 21;110(21):8477-82. doi:, 10.1073/pnas.1306759110. Epub 2013 May 6. PMID:23650375
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (4jr1.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4JR1
  • CSU: Contacts of Structural Units for 4JR1
  • Structure Factors (201 Kb)
  • Retrieve 4JR1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JR1 from S2C, [Save to disk]
  • Re-refined 4jr1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JR1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JR1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JR1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jr1_B] [4jr1_C] [4jr1_A] [4jr1] [4jr1_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JR1: [CASc ] by SMART
  • Other resources with information on 4JR1
  • Community annotation for 4JR1 at PDBWiki (http://pdbwiki.org)

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