4JR3 Crystal structure of EGFR kinase domain in complex with compound 3g date 2013-03-21
authors Peng, Y.H., Wu, J.S.
compound source
symmetry
R_factor
R_Free 0.24806
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand KJR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProtein Kinase Inhibitor Design by Targeting the Asp-Phe-Gly (DFG) Motif: The Role of the DFG Motif in the Design of Epidermal Growth Factor Receptor Inhibitors., Peng YH, Shiao HY, Tu CH, Liu PM, Hsu JT, Amancha PK, Wu JS, Coumar MS, Chen CH, Wang SY, Lin WH, Sun HY, Chao YS, Lyu PC, Hsieh HP, Wu SY, J Med Chem. 2013 May 23;56(10):3889-903. doi: 10.1021/jm400072p. Epub 2013 May, 10. PMID:23611691
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (4jr3.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 4JR3
  • CSU: Contacts of Structural Units for 4JR3
  • Structure Factors (335 Kb)
  • Retrieve 4JR3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JR3 from S2C, [Save to disk]
  • Re-refined 4jr3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JR3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JR3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JR3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jr3] [4jr3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JR3: [TyrKc ] by SMART
    • Other resources with information on 4JR3
  • Community annotation for 4JR3 at PDBWiki (http://pdbwiki.org)

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