4JR8 Crystal structure of cruxrhodopsin-3 from Haloarcula vallismortis at 2.3 angstrom resolution date 2013-03-21
authors Kouyama, T., Chan, S.K.
compound source
symmetry
R_factor
R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand 22B, RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


  • Primary referenceCrystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis., Chan SK, Kitajima-Ihara T, Fujii R, Gotoh T, Murakami M, Ihara K, Kouyama T, PLoS One. 2014 Sep 30;9(9):e108362. doi: 10.1371/journal.pone.0108362., eCollection 2014. PMID:25268964
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4jr8.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 4JR8
  • CSU: Contacts of Structural Units for 4JR8
  • Structure Factors (147 Kb)
  • Retrieve 4JR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JR8 from S2C, [Save to disk]
  • Re-refined 4jr8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JR8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JR8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jr8] [4jr8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JR8: [Bac_rhodopsin ] by SMART
  • Other resources with information on 4JR8
  • Community annotation for 4JR8 at PDBWiki (http://pdbwiki.org)

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