4JR9 Crystal structure of nitrate/nitrite exchanger NarK date 2013-03-21
authors Zheng, H., Wisedchaisri, G., Gonen, T.
compound source
symmetry
R_factor
R_Free 0.26132
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand GYP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a nitrate/nitrite exchanger., Zheng H, Wisedchaisri G, Gonen T, Nature. 2013 May 30;497(7451):647-51. doi: 10.1038/nature12139. Epub 2013 May 12. PMID:23665960
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (4jr9.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 4JR9
  • CSU: Contacts of Structural Units for 4JR9
  • Structure Factors (696 Kb)
  • Retrieve 4JR9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JR9 from S2C, [Save to disk]
  • Re-refined 4jr9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JR9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JR9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JR9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jr9_L] [4jr9] [4jr9_A] [4jr9_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JR9: [IG_like] [IGv ] by SMART
  • Other resources with information on 4JR9
  • Community annotation for 4JR9 at PDBWiki (http://pdbwiki.org)

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