4JRI Crystal Structure of Escherichia coli Hfq Proximal Edge Mutant date
authors Robinson, K.E., Orans, J.
compound source
symmetry
R_factor
R_Free 0.2573
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.83
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceMapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching., Robinson KE, Orans J, Kovach AR, Link TM, Brennan RG, Nucleic Acids Res. 2013 Nov 27. PMID:24288369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4jri.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (4jri.pdb2.gz) 66 Kb
  • CSU: Contacts of Structural Units for 4JRI
  • Structure Factors (374 Kb)
  • Retrieve 4JRI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JRI from S2C, [Save to disk]
  • Re-refined 4jri structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JRI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JRI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JRI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jri_B] [4jri_A] [4jri_C] [4jri_D] [4jri]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JRI
  • Community annotation for 4JRI at PDBWiki (http://pdbwiki.org)

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