4JRY Crystal Structure of SB47 TCR-HLA B*3505-LPEP complex date
authors Liu, Y.C., Rossjohn, J., Gras, S.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

    • Primary referenceHighly divergent T-cell receptor binding modes underlie specific recognition of a bulged viral peptide bound to a human leukocyte antigen class I molecule., Liu YC, Miles JJ, Neller MA, Gostick E, Price DA, Purcell AW, McCluskey J, Burrows SR, Rossjohn J, Gras S, J Biol Chem. 2013 May 31;288(22):15442-54. doi: 10.1074/jbc.M112.447185. Epub, 2013 Apr 8. PMID:23569211
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (4jry.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4JRY
  • CSU: Contacts of Structural Units for 4JRY
  • Structure Factors (629 Kb)
  • Retrieve 4JRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JRY from S2C, [Save to disk]
  • Re-refined 4jry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JRY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JRY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jry_E] [4jry] [4jry_B] [4jry_D] [4jry_C] [4jry_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JRY: [IG] [IG_like] [IGc1 ] by SMART
    • Other resources with information on 4JRY
  • Community annotation for 4JRY at PDBWiki (http://pdbwiki.org)

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