4JT9 Crystal Structure of human SIRT3 with ELT inhibitor 3 [14-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide] date 2013-03-22
authors Dai, H.
compound source
symmetry
R_factor
R_Free 0.24693
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.24
ligand 1NS, GOL, NA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of Thieno[3,2-d]pyrimidine-6-carboxamides as potent inhibitors of SIRT1, SIRT2 and SIRT3., Disch JS, Evindar G, Chui CH, Blum CA, Dai H, Jin L, Schuman E, Lind KE, Belyanskaya SL, Deng J, Coppo FT, Aquilani L, Graybill TL, Cuozzo JW, Lavu S, Mao C, Vlasuk GP, Perni RB, J Med Chem. 2013 Apr 9. PMID:23570514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4jt9.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4JT9
  • CSU: Contacts of Structural Units for 4JT9
  • Structure Factors (255 Kb)
  • Retrieve 4JT9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JT9 from S2C, [Save to disk]
  • Re-refined 4jt9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JT9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JT9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JT9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jt9] [4jt9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JT9
  • Community annotation for 4JT9 at PDBWiki (http://pdbwiki.org)

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