4JVS Crystal structure of LepB GAP domain from Legionella drancourtii in complex with Rab1-GDP and AlF3 date 2013-03-26
authors Yu, Q., Yao, Q., Wang, D.C., Shao, F.
compound source
symmetry
R_factor
R_Free 0.2645
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.78
ligand ACY, AF3, GDP, MG enzyme
Gene LDG
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural analyses of Legionella LepB reveal a new GAP fold that catalytically mimics eukaryotic RasGAP., Yu Q, Hu L, Yao Q, Zhu Y, Dong N, Wang DC, Shao F, Cell Res. 2013 Apr 16. doi: 10.1038/cr.2013.54. PMID:23588383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4jvs.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4JVS
  • CSU: Contacts of Structural Units for 4JVS
  • Structure Factors (226 Kb)
  • Retrieve 4JVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JVS from S2C, [Save to disk]
  • Re-refined 4jvs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JVS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JVS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jvs_A] [4jvs_B] [4jvs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JVS: [RAB ] by SMART
    • Other resources with information on 4JVS
  • Community annotation for 4JVS at PDBWiki (http://pdbwiki.org)

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