4JXJ Crystal Structure of Ribosomal RNA small subunit methyltransferase A from Rickettsia bellii Determined by Iodide SAD Phasing date 2013-03-28
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.2649
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand EDO, IOD enzyme
Gene RBE ; YP
Gene
Ontology
ChainFunctionProcessComponent
A
  • rRNA (adenine-N6,N6-)-dimeth...
  • rRNA methyltransferase activ...
  • rRNA (adenine) methyltransfe...
  • 16S rRNA (adenine(1518)-N(6)...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (4jxj.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 4JXJ
  • CSU: Contacts of Structural Units for 4JXJ
  • Structure Factors (247 Kb)
  • Retrieve 4JXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JXJ from S2C, [Save to disk]
  • Re-refined 4jxj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JXJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JXJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jxj_A] [4jxj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JXJ: [rADc ] by SMART
  • Other resources with information on 4JXJ
  • Community annotation for 4JXJ at PDBWiki (http://pdbwiki.org)

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