4JZR	Structure of Prolyl Hydroxylase Domain-containing Protein (PHD) with Inhibitors	date	2013-04-03
authors	Ma, Y., Yang, L.
compound		source
symmetry		R_factor R_Free 0.2594
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.10
ligand	4JR, EDO, NI	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Novel complex crystal structure of prolyl hydroxylase domain-containing protein 2 (PHD2): 2,8-Diazaspiro[4.5]decan-1-ones as potent, orally bioavailable PHD2 inhibitors., Deng G, Zhao B, Ma Y, Xu Q, Wang H, Yang L, Zhang Q, Guo TB, Zhang W, Jiao Y, Cai X, Zhang J, Liu H, Guan X, Lu H, Xiang J, Elliott JD, Lin X, Ren F, Bioorg Med Chem. 2013 Nov 1;21(21):6349-58. doi: 10.1016/j.bmc.2013.08.046. Epub , 2013 Sep 3. PMID:24055079

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (4jzr.pdb1.gz) 35 Kb LPC: Ligand-Protein Contacts for 4JZR CSU: Contacts of Structural Units for 4JZR Structure Factors (207 Kb) Retrieve 4JZR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4JZR from S2C, [Save to disk] Re-refined 4jzr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4JZR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4JZR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4JZR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4jzr] [4jzr_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4JZR: [P4Hc ] by SMART

Other resources with information on 4JZR

Community annotation for 4JZR at PDBWiki (http://pdbwiki.org)

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