4K0V Structural basis for angiopoietin-1 mediated signaling initiation date 2013-04-04
authors Yu, X., Seegar, T.C.M., Dalton, A.C., Tzvetkova-Robev, D., Goldgur, Y., Nikolov, D.B., Barton, W.A.
compound source
symmetry
R_factor
R_Free 0.2878
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.51
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis for angiopoietin-1-mediated signaling initiation., Yu X, Seegar TC, Dalton AC, Tzvetkova-Robev D, Goldgur Y, Rajashankar KR, Nikolov DB, Barton WA, Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7205-10. doi:, 10.1073/pnas.1216890110. Epub 2013 Apr 16. PMID:23592718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (4k0v.pdb1.gz) 117 Kb
  • CSU: Contacts of Structural Units for 4K0V
  • Structure Factors (116 Kb)
  • Retrieve 4K0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K0V from S2C, [Save to disk]
  • Re-refined 4k0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K0V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K0V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k0v_B] [4k0v] [4k0v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4K0V: [EGF] [EGF_like] [FBG] [FN3] [IG_like ] by SMART
    • Other resources with information on 4K0V
  • Community annotation for 4K0V at PDBWiki (http://pdbwiki.org)

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