4YET X-ray crystal structure of superoxide dismutase from Babesia bovis solved by Sulfur SAD date
authors Fairman, J.W., Clifton, M.C., Abendroth, J., Edwards, T.E., Lorimer, D., SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.1763
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand FE enzyme
note 4YET supersedes 4K2W
Gene BBOV
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...


    • Primary referenceIron superoxide dismutases in eukaryotic pathogens: new insights from Apicomplexa and Trypanosoma structures., Phan IQ, Davies DR, Moretti NS, Shanmugam D, Cestari I, Anupama A, Fairman JW, Edwards TE, Stuart K, Schenkman S, Myler PJ, Acta Crystallogr F Struct Biol Commun. 2015 May;71(Pt 5):615-21. doi:, 10.1107/S2053230X15004185. Epub 2015 May 7. PMID:25961325
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (4yet.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 4YET
  • CSU: Contacts of Structural Units for 4YET
  • Structure Factors (673 Kb)
  • Retrieve 4YET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YET from S2C, [Save to disk]
  • Re-refined 4yet structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YET in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YET
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YET, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yet] [4yet_B] [4yet_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YET
  • Community annotation for 4YET at PDBWiki (http://pdbwiki.org)

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