4K4G Ternary crystal structures of human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND L-DCTP. date
authors Vyas, R., Suo, Z.
compound source
symmetry
R_factor
R_Free 0.24985
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand 1S0, ACT, CA, CAC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, M, I, E


Primary referenceStructural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda, Vyas R, Zahurancik WJ, Suo Z, Proc Natl Acad Sci U S A. 2014 Jul 11. pii: 201401286. PMID:25015085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (4k4g.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (4k4g.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (4k4g.pdb3.gz) 66 Kb
  • Biological Unit Coordinates (4k4g.pdb4.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 4K4G
  • CSU: Contacts of Structural Units for 4K4G
  • Structure Factors (4340 Kb)
  • Retrieve 4K4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K4G from S2C, [Save to disk]
  • Re-refined 4k4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K4G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K4G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k4g_P] [4k4g_F] [4k4g_M] [4k4g_N] [4k4g_G] [4k4g_A] [4k4g_H] [4k4g_K] [4k4g_D] [4k4g_J] [4k4g_B] [4k4g_C] [4k4g_E] [4k4g] [4k4g_I] [4k4g_L] [4k4g_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4K4G: [HhH1] [POLXc ] by SMART
    • Other resources with information on 4K4G
  • Community annotation for 4K4G at PDBWiki (http://pdbwiki.org)

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