4K4Q TL-3 inhibited Trp6Ala HIV Protease with 3-bromo-2,6-dimethoxybenzoic acid bound in flap site date 2013-04-12
authors Tiefenbrunn, T., Stout, C.D.
compound source
symmetry
R_factor
R_Free 0.2297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 06B, 3TL, BME, DMS, NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic Fragment Based Drug Discovery: Use of a Brominated Fragment Library Targeting HIV Protease., Tiefenbrunn T, Forli S, Happer M, Gonzalez A, Tsai Y, Soltis M, Elder JH, Olson AJ, Stout CD, Chem Biol Drug Des. 2013 Sep 2. doi: 10.1111/cbdd.12227. PMID:23998903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4k4q.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 4K4Q
  • CSU: Contacts of Structural Units for 4K4Q
  • Structure Factors (335 Kb)
  • Retrieve 4K4Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K4Q from S2C, [Save to disk]
  • Re-refined 4k4q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K4Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K4Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K4Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k4q_B] [4k4q_A] [4k4q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4K4Q
  • Community annotation for 4K4Q at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science