4K94 Crystal structure of KIT D4D5 fragment in complex with anti-Kit antibody Fab19 date
authors Resheynyak, A.V., Boggon, T.J., Lax, I., Schlessinger, J.
compound source
symmetry
R_factor
R_Free 0.2349
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand NAG enzyme
Primary referenceStructural basis for KIT receptor tyrosine kinase inhibition by antibodies targeting the D4 membrane-proximal region., Reshetnyak AV, Nelson B, Shi X, Boggon TJ, Pavlenco A, Mandel-Bausch EM, Tome F, Suzuki Y, Sidhu SS, Lax I, Schlessinger J, Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17832-7. doi:, 10.1073/pnas.1317118110. Epub 2013 Oct 14. PMID:24127596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (4k94.pdb1.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 4K94
  • CSU: Contacts of Structural Units for 4K94
  • Structure Factors (217 Kb)
  • Retrieve 4K94 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K94 from S2C, [Save to disk]
  • Re-refined 4k94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K94 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K94
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K94, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k94] [4k94_L] [4k94_C] [4k94_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4K94: [IG] [IG_like] [IGv ] by SMART
    • Other resources with information on 4K94
  • Community annotation for 4K94 at PDBWiki (http://pdbwiki.org)

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