4KBR	Crystal structure of mouse Ceramide-1-phosphate transfer protein (apo-form)	date	2013-04-23
authors	Simanshu, D.K., Brown, R.E., Patel, D.J.
compound		source
symmetry		R_factor R_Free 0.2709
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.55
ligand	PO4	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Non-vesicular trafficking by a ceramide-1-phosphate transfer protein regulates eicosanoids., Simanshu DK, Kamlekar RK, Wijesinghe DS, Zou X, Zhai X, Mishra SK, Molotkovsky JG, Malinina L, Hinchcliffe EH, Chalfant CE, Brown RE, Patel DJ, Nature. 2013 Aug 22;500(7463):463-7. doi: 10.1038/nature12332. Epub 2013 Jul 17. PMID:23863933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk] Biological Unit Coordinates (4kbr.pdb1.gz) 69 Kb Biological Unit Coordinates (4kbr.pdb2.gz) 69 Kb Biological Unit Coordinates (4kbr.pdb3.gz) 70 Kb Biological Unit Coordinates (4kbr.pdb4.gz) 68 Kb Biological Unit Coordinates (4kbr.pdb5.gz) 70 Kb Biological Unit Coordinates (4kbr.pdb6.gz) 68 Kb Biological Unit Coordinates (4kbr.pdb7.gz) 69 Kb Biological Unit Coordinates (4kbr.pdb8.gz) 66 Kb Biological Unit Coordinates (4kbr.pdb9.gz) 136 Kb LPC: Ligand-Protein Contacts for 4KBR CSU: Contacts of Structural Units for 4KBR Structure Factors (687 Kb) Retrieve 4KBR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4KBR from S2C, [Save to disk] Re-refined 4kbr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4KBR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4KBR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4KBR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4kbr] [4kbr_G] [4kbr_F] [4kbr_H] [4kbr_C] [4kbr_B] [4kbr_A] [4kbr_E] [4kbr_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4KBR

Community annotation for 4KBR at PDBWiki (http://pdbwiki.org)

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