4KHN Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase date 2013-04-30
authors Guja, K.E., Jacewicz, A., Trzemecka, A., Plochocka, D., Yakubovskaya, E., Bebenek, A., Garcia-Diaz, M.
compound source
symmetry
R_factor
R_Free 0.2109
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand CA, GOL, NA, SO4, XG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Primary referenceA Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site., Jacewicz A, Trzemecka A, Guja KE, Plochocka D, Yakubovskaya E, Bebenek A, Garcia-Diaz M, PLoS One. 2013 Oct 7;8(10):e76700. doi: 10.1371/journal.pone.0076700. PMID:24116139
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (648 Kb) [Save to disk]
  • Biological Unit Coordinates (4khn.pdb1.gz) 329 Kb
  • Biological Unit Coordinates (4khn.pdb2.gz) 314 Kb
  • LPC: Ligand-Protein Contacts for 4KHN
  • CSU: Contacts of Structural Units for 4KHN
  • Structure Factors (769 Kb)
  • Retrieve 4KHN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KHN from S2C, [Save to disk]
  • Re-refined 4khn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KHN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KHN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KHN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4khn_C] [4khn] [4khn_A] [4khn_B] [4khn_F] [4khn_E] [4khn_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KHN: [POLBc ] by SMART
  • Other resources with information on 4KHN
  • Community annotation for 4KHN at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science