4KLF DNA polymerase beta matched reactant complex with Mg2+, 20 s date
authors Freudenthal, B.D., Beard, W.A., Shock, D.D., Wilson, S.H.
compound source
symmetry
R_factor
R_Free 0.2312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand CL, DCP, MG, NA, PPV enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceObserving a DNA polymerase choose right from wrong., Freudenthal BD, Beard WA, Shock DD, Wilson SH, Cell. 2013 Jul 3;154(1):157-68. doi: 10.1016/j.cell.2013.05.048. PMID:23827680
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4klf.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4KLF
  • CSU: Contacts of Structural Units for 4KLF
  • Structure Factors (349 Kb)
  • Retrieve 4KLF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KLF from S2C, [Save to disk]
  • Re-refined 4klf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KLF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KLF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KLF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4klf_T] [4klf] [4klf_A] [4klf_P] [4klf_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KLF: [HhH1] [POLXc ] by SMART
  • Other resources with information on 4KLF
  • Community annotation for 4KLF at PDBWiki (http://pdbwiki.org)

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