4KP0 Crystal Structure of the human Chymase with TJK002 date 2013-05-12
authors Kakuda, S., Takimoto-Kamimura, M.
compound source
symmetry
R_factor
R_Free 0.3302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand KPK enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a complex of human chymase with its benzimidazole derived inhibitor., Matsumoto Y, Kakuda S, Koizumi M, Mizuno T, Muroga Y, Kawamura T, Takimoto-Kamimura M, J Synchrotron Radiat. 2013 Nov;20(Pt 6):914-8. doi: 10.1107/S0909049513020748., Epub 2013 Sep 25. PMID:24121339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4kp0.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 4KP0
  • CSU: Contacts of Structural Units for 4KP0
  • Structure Factors (110 Kb)
  • Retrieve 4KP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KP0 from S2C, [Save to disk]
  • Re-refined 4kp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KP0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KP0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kp0_A] [4kp0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KP0: [Tryp_SPc ] by SMART
    • Other resources with information on 4KP0
  • Community annotation for 4KP0 at PDBWiki (http://pdbwiki.org)

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